PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC38046_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 128aa    MW: 14151.1 Da    PI: 11.0715
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC38046_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.63e-08106125222
          AP2   2 gykGVrwdkkrgrWvAeIrdp 22 
                   y+GVr+++ +g+WvAeIr p
  RrC38046_p1 106 LYRGVRQRH-WGKWVAEIRLP 125
                  59******9.*********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.507106128IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-5106126IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-9106126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
TNLSPKVSEI RASLAGGPNT LDSVFSFLAT SSVTTSLDTL NPPPLQLGSS VYLHQRDLIE  60
SFHLQNRAIS TPPPPLFSSS FDHQSSPAAA FAAALAAWWT LKKKKLYRGV RQRHWGKWVA  120
EIRLPQNR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013661527.13e-67PREDICTED: ethylene-responsive transcription factor ERF061
SwissprotQ9C7W21e-52ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A078IAD33e-67A0A078IAD3_BRANA; BnaA09g12290D protein
STRINGBra027736.1-P3e-66(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41742551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.19e-40ERF family protein